Научные руководители
Алексеев Никита Владимировичкандидат физико-математических наук nikita_alexeev@itmo.ru Структурное подразделение: научно-образовательный центр геномного разнообразия Должность: инженер-исследователь Профиль: 05.13.18 - Математическое моделирование, численные методы и комплексы программ Область интересов: Биоинформатика и вычислительная биология. Методы оценки эволюционного расстояния и построения филогенетических деревьев и сетей. Комбинаторные задачи вычислительной биологии. Рабочий язык: Английский, Русский |
Публикации руководителя
| Выходные данные | Год | Индексирование в БД |
| Eliseev A., Gibson K., Avdeyev P., Novik D., Bendall M., Perez-Losada M., Alexeev N.V., Crandall K. Evaluation of haplotype callers for next-generation sequencing of viruses//Infection, Genetics and Evolution, 2020, Vol. 82, pp. 104277 | 2020 | Scopus, Web of Science |
| Avdeyev P., Alexeev N.V., Rong Y., Alekseyev M.A. A unified ILP framework for core ancestral genome reconstruction problems//Bioinformatics, 2020, Vol. 36, No. 10, pp. 2993-3003 | 2020 | Scopus, Web of Science |
| Alexeev N., Isomurodov J., Sukhov V., Korotkevich G., Sergushichev A. Markov chain Monte Carlo for active module identification problem//BMC bioinformatics, 2020, Vol. 21, No. 6, pp. 261 | 2020 | Scopus, Web of Science |
| Aganezov S., Zban I., Aksenov V., Alexeev N.V., Schatz M.C. Recovering rearranged cancer chromosomes from karyotype graphs//BMC bioinformatics, 2019, Vol. 20, pp. 641 | 2019 | Scopus, Web of Science |
| Alexeev N.V., Alekseyev M.A. Combinatorial scoring of phylogenetic trees and networks based on homoplasy-free characters//Journal of Computational Biology, 2018, Vol. 25, No. 11, pp. 1203-1219 | 2018 | Scopus, Web of Science |
| Zabelkin A., Alexeev N. Estimation of the true evolutionary distance under the INFER model//Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2018, Vol. 11183, pp. 72-87 | 2018 | Scopus, Web of Science |
| Avdeyev P., Alekseev N.V., Alekseyev M.A., Rong Y. A unified ILP framework for genome median, halving, and aliquoting problems under DCJ//Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2017, Vol. 10562, pp. 156-178 | 2017 | Scopus, Web of Science |
| Alekseev N.V., Tikhomirov A. Singular Values Distribution of Squares of Elliptic Random Matrices and Type B Narayana Polynomials//Journal of Theoretical Probability, 2017, Vol. 30, No. 3, pp. 1170–1190 | 2017 | Scopus, Web of Science |
| Alekseev N.V., Alekseyev M.A. Estimation of the True Evolutionary Distance under the Fragile Breakage Model//BMC Genomics, 2017, Vol. 18, No. 4, pp. 356 | 2017 | Scopus, Web of Science |
| Alekseev N.V., Pologova A., Alekseyev M. Generalized Hultman Numbers and Cycle Structures of Breakpoint Graphs//Journal of Computational Biology, 2017, Vol. 24, No. 2, pp. 93-105 | 2017 | Scopus, Web of Science |
| Alekseev N.V., Avdeyev P., Alekseyev M. Comparative Genomics Meets Topology: a Novel View on Genome Median and Halving Problems//BMC bioinformatics, 2016, Vol. 17, No. 11, pp. 213-223 | 2016 | Scopus, Web of Science |
| Alekseev N.V., Andersen J., Penner R., Zograf A.P. Enumeration of chord diagrams on many intervals and their non-orientable analogs//Advances in Mathematics, 2016, Vol. 289, pp. 1056-1081 | 2016 | Scopus, Web of Science |
| Alekseev N.V., Alekseyev M. Combinatorial Scoring of Phylogenetic Networks//Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2016, Vol. 9797, pp. 560-572 | 2016 | Scopus, Web of Science |
| Alexeev N., Aidagulov R., Alekseyev M.A. A computational method for the rate estimation of evolutionary transpositions//Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2015, Vol. 9043, pp. 471-480 | 2015 | Scopus, Web of Science |
| Alexeev N., Pologova A., Alekseyev M. Generalized Hultman Numbers and the Distribution of Multi-break Distances//Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2015, Vol. 9199, pp. 3-12 | 2015 | Scopus, Web of Science |
| Rozanov D., Cheltsov A., Sergienko E., Vasile S., Golubkov V., Aleshin A.E., Levin T., Traer E., Hann B., Freimuth J., Alexeev N., Alekseyev M., Budko S.P., Baechinger H.P., Spellman P. TRAIL-Based High Throughput Screening Reveals a Link between TRAIL-Mediated Apoptosis and Glutathione Reductase, a Key Component of Oxidative Stress Response//PLoS ONE, 2015, Vol. 10, No. 6, pp. e0129566 | 2015 | Scopus, Web of Science |