Алексеев Никита Владимирович


кандидат физико-математических наук
nikita_alexeev@itmo.ru
Структурное подразделение:
научно-образовательный центр геномного разнообразия
Должность:
инженер-исследователь
Профиль:
05.13.18 - Математическое моделирование, численные методы и комплексы программ

Область интересов:
Биоинформатика и вычислительная биология. Методы оценки эволюционного расстояния и построения филогенетических деревьев и сетей. Комбинаторные задачи вычислительной биологии.
Рабочий язык:
Английский, Русский

Публикации руководителя
Выходные данные Год Индексирование в БД
Eliseev A., Gibson K., Avdeyev P., Novik D., Bendall M., Perez-Losada M., Alexeev N.V., Crandall K. Evaluation of haplotype callers for next-generation sequencing of viruses//Infection, Genetics and Evolution, 2020, Vol. 82, pp. 104277 2020 Scopus, Web of Science
Avdeyev P., Alexeev N.V., Rong Y., Alekseyev M.A. A unified ILP framework for core ancestral genome reconstruction problems//Bioinformatics, 2020, Vol. 36, No. 10, pp. 2993-3003 2020 Scopus, Web of Science
Alexeev N., Isomurodov J., Sukhov V., Korotkevich G., Sergushichev A. Markov chain Monte Carlo for active module identification problem//BMC bioinformatics, 2020, Vol. 21, No. 6, pp. 261 2020 Scopus, Web of Science
Aganezov S., Zban I., Aksenov V., Alexeev N.V., Schatz M.C. Recovering rearranged cancer chromosomes from karyotype graphs//BMC bioinformatics, 2019, Vol. 20, pp. 641 2019 Scopus, Web of Science
Alexeev N.V., Alekseyev M.A. Combinatorial scoring of phylogenetic trees and networks based on homoplasy-free characters//Journal of Computational Biology, 2018, Vol. 25, No. 11, pp. 1203-1219 2018 Scopus, Web of Science
Zabelkin A., Alexeev N. Estimation of the true evolutionary distance under the INFER model//Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2018, Vol. 11183, pp. 72-87 2018 Scopus, Web of Science
Avdeyev P., Alekseev N.V., Alekseyev M.A., Rong Y. A unified ILP framework for genome median, halving, and aliquoting problems under DCJ//Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2017, Vol. 10562, pp. 156-178 2017 Scopus, Web of Science
Alekseev N.V., Tikhomirov A. Singular Values Distribution of Squares of Elliptic Random Matrices and Type B Narayana Polynomials//Journal of Theoretical Probability, 2017, Vol. 30, No. 3, pp. 1170–1190 2017 Scopus, Web of Science
Alekseev N.V., Alekseyev M.A. Estimation of the True Evolutionary Distance under the Fragile Breakage Model//BMC Genomics, 2017, Vol. 18, No. 4, pp. 356 2017 Scopus, Web of Science
Alekseev N.V., Pologova A., Alekseyev M. Generalized Hultman Numbers and Cycle Structures of Breakpoint Graphs//Journal of Computational Biology, 2017, Vol. 24, No. 2, pp. 93-105 2017 Scopus, Web of Science
Alekseev N.V., Avdeyev P., Alekseyev M. Comparative Genomics Meets Topology: a Novel View on Genome Median and Halving Problems//BMC bioinformatics, 2016, Vol. 17, No. 11, pp. 213-223 2016 Scopus, Web of Science
Alekseev N.V., Andersen J., Penner R., Zograf A.P. Enumeration of chord diagrams on many intervals and their non-orientable analogs//Advances in Mathematics, 2016, Vol. 289, pp. 1056-1081 2016 Scopus, Web of Science
Alekseev N.V., Alekseyev M. Combinatorial Scoring of Phylogenetic Networks//Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2016, Vol. 9797, pp. 560-572 2016 Scopus, Web of Science
Alexeev N., Aidagulov R., Alekseyev M.A. A computational method for the rate estimation of evolutionary transpositions//Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2015, Vol. 9043, pp. 471-480 2015 Scopus, Web of Science
Alexeev N., Pologova A., Alekseyev M. Generalized Hultman Numbers and the Distribution of Multi-break Distances//Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2015, Vol. 9199, pp. 3-12 2015 Scopus, Web of Science
Rozanov D., Cheltsov A., Sergienko E., Vasile S., Golubkov V., Aleshin A.E., Levin T., Traer E., Hann B., Freimuth J., Alexeev N., Alekseyev M., Budko S.P., Baechinger H.P., Spellman P. TRAIL-Based High Throughput Screening Reveals a Link between TRAIL-Mediated Apoptosis and Glutathione Reductase, a Key Component of Oxidative Stress Response//PLoS ONE, 2015, Vol. 10, No. 6, pp. e0129566 2015 Scopus, Web of Science