Артемов Максим


PhD, химические науки
martomov@itmo.ru
Структурное подразделение:
научно-образовательный центр геномного разнообразия
Должность:
доцент-исследователь
Профиль:
05.13.11 - Математическое и программное обеспечение вычислительных машин, комплексов и компьютерных сетей
05.13.17 - Теоретические основы информатики
05.13.18 - Математическое моделирование, численные методы и комплексы программ
05.13.10 - Управление в социальных и экономических системах

Область интересов:
Кластеризации в графовом и корреляционном пространствах, визуальный и интерактивный анализ экспрессии генов, идентификация метаболических модулей и др., применение технологий NLP в задаче предсказания связывающей способности белков молекул MHC.
Рабочий язык:
Английский, Русский

Публикации руководителя
Выходные данные Год Индексирование в БД
Daemen S., Gainullina A.N., Kalugotla G., He L., Chan M.M., Beals J.W., Liss K.H., Klein S., Feldstein A.F., Finck B.N., Artyomov M., Schilling J.D. Dynamic Shifts in the Composition of Resident and Recruited Macrophages Influence Tissue Remodeling in NASH//Cell Reports, 2021, Vol. 34, No. 2, pp. 108626 2021 Scopus, Web of Science
Miller H., Andhey P., Swiecki M., Rosa B.A., Zaitsev K., Villani A., Mitreva M., Artyomov M., Gilfillan S., Cella M., Colonna M. Altered ratio of dendritic cell subsets in skin-draining lymph nodes promotes Th2-driven contact hypersensitivity//Proceedings of the National Academy of Sciences of the United States of America, 2021, Vol. 118, No. 3, pp. e2021364118 2021 Scopus, Web of Science
Williams J.W., Zaitsev K., Kim K., Ivanov S., Saunders B.T., Schrank P., Kim K., Elvington A., Kim S., Tucker C., Wohltmann M., Fife B., Epelman S., Artyomov M., Lavine K.J., Zinselmeyer B.H., Choi J.H., Randolph G.J. Limited proliferation capacity of aortic intima resident macrophages requires monocyte recruitment for atherosclerotic plaque progression//Nature Immunology, 2020, Vol. 21, No. 10, pp. 1194-1204 2020 Scopus, Web of Science
Гайнуллина А.Н., Артемов М., Сергушичев А.А. Модификация метода совместной кластеризации в графовом и корреляционном пространствах [Method of joint clustering in network and correlation spaces] // Научно-технический вестник информационных технологий, механики и оптики [Scientific and Technical Journal of Information Technologies, Mechanics and Optics] -2020. - Т. 20. - № 6(130). - С. 807-814 2020 Scopus, ВАК, РИНЦ
Aguilar S., Aguilar O., Allan R., Amir E., Angeli V., Artyomov M.N., Asinovski N., Astarita J., Austen K., Bajpai G., Barrett N., Baysoy A., Benoist C., Bellemare-Pelletier A., Berg B., Best A., Bezman N., Blair D., Blander J., Bogunovic M., Brennan P., Brenner M., Brown B., Buechler M., Buenrostro J., Casanova M., Choi K., Chow A., Chudnovskiy A., Cipoletta D., Cohen N., Collins J., Colonna M., Cook A., Costello J., Cremasco V., Crowl T., Crozat K., Cruse R., D’Angelo J., Dalod M., Davis S., Demiralp C., Deng T., Desai J., Desland F., Dhainaut M., Ding J., Doedens A., Dominguez C., Doran G., Dress R., Dustin M., Dwyer D., Dzhagalov I., Elpek K., Ergun A., Ericson J., Esomonu E., Fairfax K., Fletcher A., Frascoli M., Fuchs A., Gainullina A., Gal-Oz S., Gallagher M., Gautier E., Gazit R., Gibbings S., Giraud M., Ginhoux F., Goldrath A., Gotthardt D., Gray D., Greter M., Grieshaber-Bouyer R., Guilliams M., Haidermota S., Hardy R., Hashimoto D., Helft J., Hendricks D., Heng T., Hill J., Hyatt G., Idoyaga J., Jakubzick C., Jarjoura J., Jepson D., Jia B., Jianu R., Johanson T., Jordan S., Jojic V., Kamimura Y., Kana V., Kang J., Kapoor V., Kenigsberg E., Kent A., Kim C., Kim E., Kim F., Kim J., Kim K., Kiner E., Knell J., Koller D., Krchma K., Kozinn L., Kreslavsky T., Kronenberg M., Kwan W., Laidlaw D., Lam V., Lanier L., Laplace C., Lareau C., Lavin Y., Lavine K., Leader A., Leboeuf M., Lee J., Lee J., Li B., Li H., Li Y., Lionakis M., Luche H., Lynch L., Magen A., Maier B., Malhotra D., Malhotra N., Malissen M., Maslova A., Mathis D., Mcfarland A., Merad M., Meunier E., Miller J., Milner J., Mingueneau M., Min-Oo G., Monach P., Moodley D., Mortha A., Morvan M., Mostafavi S., Muller S., Muus C., Nabekura T., Nageswara Rao T., Narang V., Narayan K., Ner-Gaon H., Nguyen Q., Nigrovic P., Novakovsky G., Nutt S., Omilusik K., Ortiz-Lopez A., Paidassi H., Paik H., Painter M., Paynich M., Peng V., Potempa M., Pradhan R., Price J., Qi Y., Qi Y., Quon S., Ramirez R., Ramanan D., Randolph G., Regev A., Rhoads A., Robinette M., Rose S., Rossi D., Rothamel K., Sachidanandam R., Sathe P., Scott C., Seddu K., See P., Sergushichev A., Shaw L., Shay T., Shemesh A., Shinton S., Shyer J., Sieweke M., Smillie C., Spel L., Spidale N., Stifano G., Subramanian A., Sun J., Sylvia K., Tellier J., This S., Tomasello E., Todorov H., Turley S., Vijaykumar B., Wagers A., Wakamatsu E., Wang C., Wang P., Wroblewska A., Wu J., Yang E., Yang L., Yim A., Yng L., Yoshida H., Yu B., Zhou Y., Zhu Y., Ziemkiewicz C. ImmGen at 15//Nature Immunology, 2020, Vol. 21, No. 7, pp. 700-703 2020 Scopus, Web of Science
Esaulova E., Cantoni C., Shchukina I., Zaitsev K., Bucelli R., Wu G., Artyomov M., Cross A., Edelson B. Single-cell RNA-seq analysis of human CSF microglia and myeloid cells in neuroinflammation//Neurology: Neuroimmunology and NeuroInflammation, 2020, Vol. 7, No. 4, pp. e732 2020 Scopus, Web of Science
Zhou Y., Song W., Andhey P., Swain A., Levy T., Miller K., Poliani P., Cominelli M., Grover S., Gilfillan S., Cella M., Ulland T.K., Zaitsev K., Miyashita A., Ikeuchi T., Sainouchi M., Kakita A., Bennett D., Schneider J., Nichols M., Beausoleil S., Ulrich J.D., Holtzman D.M., Artyomov M.N., Colonna M. Human and mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer's disease//Nature medicine, 2020, Vol. 26, No. 1, pp. 131-142 2020 Scopus, Web of Science
Park E., Patel S., Wang Q., Andhey P., Zaitsev K., Porter S., Hershey M., Bern M., Plougastel-Douglas B., Collins P.L., Colonna M., Murphy K.M., Oltz E.M., Artyomov M.N., Sibley L., Yokoyama W. Toxoplasma gondii infection drives conversion of NK cells into ILC1-like cells//eLife, 2019, Vol. 8, pp. e47605 2019 Scopus, Web of Science
Zaitsev K., Bambouskova M., Swain A., Artyomov M.N. Complete deconvolution of cellular mixtures based on linearity of transcriptional signatures//Nature Communications, 2019, Vol. 10, pp. 2209 2019 Scopus, Web of Science
Cella M., Gamini R., Secca C., Collins P.L., Zhao S., Peng V., Robinette M.L., Schettini J., Zaitsev K., Gordon W., Bando J.K., Yomogida K., Cortez V., Fronick C., Fulton R.S., Lin L., Gilfillan S., Flavell R.A., Shan L., Artyomov M.N., Bowman M., Oltz E.M., Jelinsky S.A., Colonna M. Publisher Correction: Subsets of ILC3?ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues (Nature Immunology, (2019), 20, 8, (980-991), 10.1038/s41590-019-0425-y)//Nature Immunology, 2019, Vol. 20, No. 10, pp. 1405 2019 Scopus, Web of Science
Gubin M.M., Esaulova E., Ward J.P., Malkova O.N., Runci D., Wong P., Noguchi T., Arthur C.D., Meng W., Alspach E., Medrano R.F., Fronick C., Fehlings M., Newell E.W., Fulton R.S., Sheehan K.C., Oh S.T., Schreiber R.D., Artyomov M.N. High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy//Cell, 2018, Vol. 175, No. 4, pp. 1014-1030.e19 2018 Scopus, Web of Science
Kim K., Shim D., Lee J.S., Zaitsev K., Williams J.W., Kim K.W., Jang M.Y., Jang H.S., Yun T.J., Lee S.H., Yoon W.K., Prat A., Seidah N.G., Choi J., Lee S.P., Yoon S.H., Nam J.W., Seong J.K., Oh G.T., Randolph G.J., Artyomov M.N., Cheong C., Choi J.H. Transcriptome Analysis Reveals NonFoamy Rather than Foamy Plaque Macrophages Are ProInflammatory in Atherosclerotic Murine Models//Circulation Research, 2018, Vol. 123, No. 10, pp. 1127-1142 2018 Scopus, Web of Science
Brahler S., Zinselmeyer B.H., Raju S., Nitschke M., Suleiman H., Saunders B.T., Johnson M.W., Bohner A.M., Viehmann S.F., Theisen D.J., Kretzer N.M., Briseno C.G., Zaitsev K., Ornatsky O.I., Chang Q., Carrero J.A., Kopp J.B., Artyomov M.N., Kurts C., Murphy K.M., Miner J.H., Shaw A.S. Opposing roles of dendritic cell subsets in experimental GN//Journal of the American Society of Nephrology, 2018, Vol. 29, No. 1, pp. 138-154 2018 Scopus, Web of Science
Gorman M.J., Caine E.A., Zaitsev K., Begley M.C., Weger-Lucarelli J., Uccellini M.B., Tripathi S., Morrison J., Yount B.L., Dinnon K.H., Ruckert C., Young M.C., Zhu Z., Robertson S.J., Mcnally K.L., Ye J., Cao B., Mysorekar I.U., Ebel G.D., Baric R.S., Best S.M., Artyomov M.N., Garcia-Sastre A., Diamond M.S. An Immunocompetent Mouse Model of Zika Virus Infection//Cell Host and Microbe, 2018, Vol. 23, No. 5, pp. 672-685 2018 Scopus, Web of Science
Bi W.L., Greenwald N.F., Abedalthagafi M., Wala J., Gibson W.J., Agarwalla P.K., Horowitz P., Schumacher S.E., Esaulova E., Mei Y., Chevalier A., Ducar M.A., Thorner A.R., Van Hummelen P., Stemmer-Rachamimov A.O., Artemov M., Al-Mefty O., Dunn G.P., Santagata S., Dunn I.F., Beroukhim R. Erratum: Genomic landscape of high-grade meningiomas//NPJ Genomic Medicine, 2017, Vol. 2, pp. 26 2017 Scopus, Web of Science
Ulland T.K., Song W., Huang S.C., Ulrich J.D., Sergushichev A.A., Beatty W.L., Loboda A.A., Zhou Y., Cairns N.J., Kambal A., Loginicheva E., Gilfillan S., Cella M., Virgin H.W., Unanue E.R., Wang Y., Artyomov M.N., Holtzman D.M., Colonna M. TREM2 Maintains Microglial Metabolic Fitness in Alzheimer's Disease//Cell, 2017, Vol. 170, No. 4, pp. 649-663.e13 2017 Scopus, Web of Science
Steed A.L., Christophides G.K., Kaiko G.E., Sun L., Goodwin V.M., Jain U., Esaulova E., Artyomov M.N., Morales D.J., Holtzman M.J., Boon A.C., Lenschow D.J., Stappenbeck T.S. The microbial metabolite desaminotyrosine protects from influenza through type I interferon//Science, 2017, Vol. 357, No. 6350, pp. 498-502 2017 Scopus, Web of Science
Chatterjee S., Luthra P., Esaulova E., Agapov E., Yen B., Borek D.M., Edwards M.R., Mittal A., Jordan D.S., Ramanan P., Moore M.L., Pappu R.V., Holtzman M.J., Artyomov M., Basler C.F., Amarasinghe G.K., Leung D.W. Structural basis for human respiratory syncytial virus NS1-mediated modulation of host responses//Nature Microbiology, 2017, Vol. 2, No. 9, pp. 17101 2017 Scopus, Web of Science
Bi W.L., Greenwald N.F., Abedalthagafi M., Wala J., Gibson W.J., Agarwalla P.K., Horowitz P., Schumacher S.E., Esaulova E., Mei Y., Chevalier A., Ducar M.A., Thorner A.R., Van Hummelen P., Stemmer-Rachamimov A.O., Artemov M., Al-Mefty O., Dunn G.P., Santagata S., Dunn I.F., Beroukhim R. Genomic landscape of high-grade meningiomas//NPJ Genomic Medicine, 2017, Vol. 2, pp. 15 2017 Scopus, Web of Science
Artyomov M.N., Sergushichev A., Schilling J. Integrating immunometabolism and macrophage diversity//Seminars in Immunology, 2016, Vol. 28, No. 5, pp. 417-424 2016 Scopus, Web of Science
Loboda A.A., Artyomov M.N., Sergushichev A.A. Solving generalized maximum-weight connected subgraph problem for network enrichment analysis//Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2016, Vol. 9838, pp. 210-221 2016 Scopus, Web of Science
Sergushichev A.A., Loboda A.A., Jha A.K., Vincent E.E., Driggers E.M., Jones R.G., Pearce E.J., Artyomov M.N. GAM: a web-service for integrated transcriptional and metabolic network analysis//Nucleic Acids Research, 2016, Vol. 44, No. 1, pp. W194-W200 2016 Scopus, Web of Science